Publications

 

  1. Prashar, T., De La Selle, F., & Hudak, K.A. (2023) Abasic RNA: its formation and potential role in cellular stress response. RNA Biology, 20(1):348-358. doi: 10.1080/15476286.2023.2223466
  2. Dougherty, K. & Hudak, K.A. (2022) Phylogeny and domain architecture of plant ribosome inactivating proteins. Phytochemistry, 202:113337. doi: 10.1016/j.phytochem.2022.113337
  3. Dougherty, K. & Hudak, K.A. (2022) Computational curation and analysis of publicly available protein sequence data from a single protein family. MethodsX, 9:101846. doi: 10.1016/j.mex.2022.101846.
  4. Klenov, A., & Hudak, K. A. (2021) Facile method of curing toxicity in large viral genomes by high-throughput identification and removal of cryptic promoters. Journal of Virological Methods, 287:113993. doi: 10.1016/j.jviromet.2020.113993
  5. Neller, K. C. M., Diaz, C. A., Platts, A. E., & Hudak K. A. (2019) De novo assembly of the pokeweed genome provides insight into pokeweed antiviral protein (PAP) gene expression. Frontiers in Plant Science,10. doi: 10.3389/fpls.2019.01002.
  6. Neller, K. C., Klenov, A., & Hudak, K. A. (2019). Prediction and Characterization of miRNA/Target Pairs in Non‐Model Plants Using RNA‐seq. Current Protocols in Plant Biology, e20090. doi.org/10.1002/cppb.20090
  7. Klenov, A., & Hudak, K. A. (2018). Complete coding sequence and infectious clone of pokeweed mosaic virus Arkansas isolate. European Journal of Plant Pathology, 152(2), 541–547. doi.org/10.1007/s10658-018-1477-9
  8. Neller, K. C., Klenov, A., Guzman, J. C., & Hudak, K. A. (2018). Integration of the pokeweed miRNA and mRNA transcriptomes reveals targeting of jasmonic acid-responsive genes. Frontiers in Plant Science, 9.  doi: 10.3389/fpls.2018.00589
  9. Kutky, M., & Hudak, K. A. (2017). Expression of an RNA glycosidase inhibits HIV-1 transactivation of transcription. Biochemical Journal, 474(20), 3471–3483. doi: 10.1042/BCJ20170353
  10. Neller, K.C., Klenov, A., & Hudak, K.A. (2016). The pokeweed leaf mRNA transcriptome and its regulation by jasmonic acid. Frontiers in Plant Science, 7. doi: 10.3389/fpls.2016.00283
  11. Klenov, A., Neller, K. C. M., Burns, L. A., Krivdova, G., & Hudak, K. A. (2015). A small RNA targets pokeweed antiviral protein transcript. Physiologia Plantarum. doi:10.1111/ppl.12393
  12. Krivdova, G., & Hudak, K. A. (2015). Pokeweed antiviral protein restores levels of cellular APOBEC3G during HIV-1 infection by depurinating Vif mRNA. Antiviral Research, 122, 51–54. doi:10.1016/j.antiviral.2015.08.007
  13. Zhabokritsky, A., Mansouri, S., & Hudak, K. A. (2014). Pokeweed antiviral protein alters splicing of HIV-1 RNAs, resulting in reduced virus production. RNA, 20(8), 1238–47. doi:10.1261/rna.043141.113
  14. Krivdova, G., Neller, K.C.M., Parikh, B.A., & Hudak, K.A. (2014). Antiviral and Antifungal Properties of RIPs. In Ribosome-inactivating Proteins (pp. 198–211). John Wiley & Sons, Ltd. doi:10.1002/9781118847237.ch13
  15. Mansouri, S., Kutky, M., & Hudak, K.A. (2012). Pokeweed antiviral protein increases HIV-1 particle infectivity by activating the cellular mitogen activated protein kinase pathway. PloS One, 7(5), e36369. doi:10.1371/journal.pone.0036369
  16. Zhabokritsky, A., Kutky, M., Burns, L.A., Karran, R.A., & Hudak, K.A. (2011). RNA toxins: mediators of stress adaptation and pathogen defense. Wiley Interdisciplinary Reviews. RNA, 2(6), 890–903. doi:10.1002/wrna.99
  17. Karran, R.A., & Hudak, K.A. (2011). Depurination of Brome mosaic virus RNA3 inhibits its packaging into virus particles. Nucleic Acids Research, 39(16), 7209–7222. doi:10.1093/nar/gkr383
  18. Tourlakis, M.E., Karran, R.A., Desouza, L., Siu, K.W.M., & Hudak, K.A. (2010). Homodimerization of pokeweed antiviral protein as a mechanism to limit depurination of pokeweed ribosomes. Molecular Plant Pathology, 11(6), 757–767. doi:10.1111/j.1364-3703.2010.00640.x